Installing

Note

We are assuming you have a working mamba installation in your computer. If this is not the case, please refer to their official documentation.

If you installed mamba into an existing conda installation, also make sure that the conda-forge channel is configured by running conda config --add channels conda-forge.

Install from the conda package

  1. Create a new conda environment called dyno with the dynophores package and all its dependencies installed:

    mamba create -n dyno dynophores
    
  2. Activate the new conda environment:

    conda activate dyno
    
  3. Test that your installation works:

    dynoviz -h
    

Install from the latest development snapshot

Install the latest development snapshot from the GitHub repository’s master branch.

  1. Create a new conda environment called dyno:

    mamba env create -f https://raw.githubusercontent.com/wolberlab/dynophores/master/devtools/conda-envs/test_env.yaml -n dyno
    
  2. Activate the new conda environment:

    conda activate dyno
    
  3. Install dynophores package via pip:

    pip install https://github.com/wolberlab/dynophores/archive/refs/heads/master.zip
    
  4. Test that your installation works:

    dynoviz -h